[Octopus-notify] Octopus-autobuild on i386: build error - Sat Oct 7 02:00:02 CEST 2006

[Heiko Appel]

--with-jdqz="-L/home/appel/opt/intel/lib" \
--with-arpack="-L/home/appel/opt/intel/lib -larpack -lPEPCF90" \
--with-sparskit="-L/home/appel/opt/intel/lib -lskit" \
--disable-gdlib \
--host=i386-linux --build=i386-linux \
--prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i386-pc-linux-gnu
checking host system type... i386-pc-linux-gnu
checking for i386-linux-gcc... i386-linux-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i386-linux-gcc accepts -g... yes
checking for i386-linux-gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of i386-linux-gcc... gcc3
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for i386-linux-ranlib... no
checking for ranlib... ranlib
checking for bison... bison -y
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking how to run the C preprocessor... i386-linux-gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking termios.h usability... yes
checking termios.h presence... yes
checking for termios.h... yes
checking for unistd.h... (cached) yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for an ANSI C-conforming const... yes
checking for pid_t... yes
checking for size_t... yes
checking whether time.h and sys/time.h may both be included... yes
checking whether getpgrp requires zero arguments... yes
checking whether i386-linux-gcc needs -traditional... no
checking for function prototypes... yes
checking whether setvbuf arguments are reversed... no
checking whether lstat dereferences a symlink specified with a trailing slash... yes
checking whether stat accepts an empty string... no
checking for vprintf... yes
checking for _doprnt... no
checking for getcwd... yes
checking for gettimeofday... yes
checking for mkdir... yes
checking for pow... no
checking for sqrt... no
checking for strcasecmp... yes
checking for strdup... yes
checking for strerror... yes
checking for strncasecmp... yes
checking for strndup... yes
checking for uname... yes
checking for tcgetpgrp... yes
checking for scandir... yes
checking for alphasort... yes
checking for sigaction... yes
checking for malloc... yes
checking for realloc... yes
checking for opendir... yes
checking for readdir... yes
checking for closedir... yes
checking for strchr... yes
checking for strtod... yes
checking for the size of a pointer... 4 bytes
checking for i386-linux-f90... ifc
checking whether we are using the GNU Fortran compiler... no
checking whether ifc accepts -g... yes
checking for Fortran flag to compile .f90 files... none
configure: Using FCFLAGS="-mp1 -prec_div -O3 -tpp7 -xW -static -I/home/appel/opt/intel/include"
checking how to get verbose linking output from ifc... -v
checking for Fortran libraries of ifc...  -lpthread -L/opt/intel/compiler70/ia32/lib -L/usr/lib -lsvml -lintrins -lIEPCF90 -lF90 -limf -lm -lirc -lcxa -lunwind
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking wether the compiler accepts very long lines... yes
**********************************************
***   octopus + utilities will be generated 
**********************************************
checking for sgemm in -L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lblas -L/usr/lib -lpthread... yes (-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lblas -L/usr/lib -lpthread)
checking for cheev in -L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -llapack -L/usr/lib -lpthread... yes (-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -llapack -L/usr/lib -lpthread)
checking for gsl-config... /home/appel/opt/nag/bin/gsl-config
checking for GSL - version >= 1.0... yes
configure: WARNING: GD library support has been disabled.
                  *** some esoteric parts of octopus will not work.
checking for dfftw_plan_dft_1d in -L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lfftw3 -L/usr/lib -lpthread... yes (-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lfftw3 -L/usr/lib -lpthread)
checking for netcdf... yes ( -L/home/appel/opt/intel/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -I/home/appel/opt/intel/include  -lnetcdf -L/usr/lib -lpthread)
checking for arpack library... yes (-L/home/appel/opt/intel/lib -larpack -lPEPCF90)
checking for sparskit library... yes (-L/home/appel/opt/intel/lib -lskit)
checking fortran 90 modules inclusion flag... -I 
configure: creating ./config.status
config.status: creating Makefile
config.status: creating external_libs/Makefile
config.status: creating external_libs/expokit/Makefile
config.status: creating external_libs/metis-4.0/Makefile
config.status: creating external_libs/qshep/Makefile
config.status: creating liboct_parser/Makefile
config.status: creating liboct/Makefile
config.status: creating src/Makefile
config.status: creating doc/Makefile
config.status: creating doc/pdf/Makefile
config.status: creating doc/html/Makefile
config.status: creating share/Makefile
config.status: creating share/PP/Makefile
config.status: creating share/PP/TM2/Makefile
config.status: creating share/PP/HGH/Makefile
config.status: creating share/recipes/Makefile
config.status: creating share/recipes/en/Makefile
config.status: creating share/recipes/es/Makefile
config.status: creating share/recipes/it/Makefile
config.status: creating share/util/Makefile
config.status: creating share/samples/Makefile
config.status: creating build/octopus.spec
config.status: creating testsuite/Makefile
config.status: creating testsuite/finite_systems_1d/Makefile
config.status: creating testsuite/finite_systems_2d/Makefile
config.status: creating testsuite/finite_systems_3d/Makefile
config.status: creating testsuite/periodic_systems_1d/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: configuring in python
configure: running /bin/sh './configure' --prefix=/usr  '--program-suffix=-intel-7.1' '--with-blas=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lblas -L/usr/lib -lpthread' '--with-lapack=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -llapack -L/usr/lib -lpthread' '--with-fft-lib=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lfftw3 -L/usr/lib -lpthread' '--with-netcdf=-L/home/appel/opt/intel/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -I/home/appel/opt/intel/include -lnetcdf -L/usr/lib -lpthread' '--with-jdqz=-L/home/appel/opt/intel/lib' '--with-arpack=-L/home/appel/opt/intel/lib -larpack -lPEPCF90' '--with-sparskit=-L/home/appel/opt/intel/lib -lskit' '--disable-gdlib' '--host=i386-linux' '--build=i386-linux' '--prefix=/usr' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' 'CFLAGS=-static -Wall -O3' 'CPPFLAGS=-I/home/appel/opt/intel/include' 'FCFLAGS=-mp1 -prec_div -O3 -tpp7 -xW -static -I/home/appel/opt/intel/include' 'FC=ifc' 'LDFLAGS=-lpthread' 'build_alias=i386-linux' 'host_alias=i386-linux' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... /usr/bin/msgmerge
checking for style of include used by make... GNU
checking for i386-linux-gcc... i386-linux-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i386-linux-gcc accepts -g... yes
checking for i386-linux-gcc option to accept ANSI C... none needed
checking dependency style of i386-linux-gcc... gcc3
checking build system type... i386-pc-linux-gnu
checking host system type... i386-pc-linux-gnu
checking for i386-linux-ranlib... no
checking for ranlib... ranlib
checking for library containing strerror... none required
checking how to run the C preprocessor... i386-linux-gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for signed... yes
checking for inline... inline
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for off_t... yes
checking for size_t... yes
checking for long long... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking whether integer division by zero raises SIGFPE... yes
checking for unsigned long long... yes
checking for inttypes.h... yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for ld used by GCC... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking for ptrdiff_t... yes
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking nl_types.h usability... yes
checking nl_types.h presence... yes
checking for nl_types.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for asprintf... yes
checking for fwprintf... yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... yes
checking for munmap... yes
checking for putenv... yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... yes
checking for strtoul... yes
checking for tsearch... yes
checking for wcslen... yes
checking for __argz_count... yes
checking for __argz_stringify... yes
checking for __argz_next... yes
checking for __fsetlocking... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... no
checking whether getc_unlocked is declared... yes
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for nl_langinfo and CODESET... yes
checking for LC_MESSAGES... yes
checking for bison... bison
checking version of bison... 1.875, ok
checking whether NLS is requested... yes
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
checking for msgfmt... (cached) /usr/bin/msgfmt
checking for gmsgfmt... (cached) /usr/bin/msgfmt
checking for xgettext... (cached) /usr/bin/xgettext
checking for msgmerge... (cached) /usr/bin/msgmerge
checking for a Python interpreter with version >= 2.4... python2.4
checking for python2.4... /usr/bin/python2.4
checking for python2.4 version... 2.4
checking for python2.4 platform... linux2
checking for python2.4 script directory... ${prefix}/lib/python2.4/site-packages
checking for python2.4 extension module directory... ${exec_prefix}/lib/python2.4/site-packages
configure: creating ./config.status
config.status: creating Makefile
config.status: creating po/Makefile.in
config.status: creating intl/Makefile
config.status: creating var2xml.py.in
config.status: creating octopus-gui.in
config.status: creating setup.py
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing depfiles commands
config.status: executing default-2 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
configure: configuring in libstring_f
configure: running /bin/sh './configure' --prefix=/usr  '--program-suffix=-intel-7.1' '--with-blas=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lblas -L/usr/lib -lpthread' '--with-lapack=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -llapack -L/usr/lib -lpthread' '--with-fft-lib=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lfftw3 -L/usr/lib -lpthread' '--with-netcdf=-L/home/appel/opt/intel/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -I/home/appel/opt/intel/include -lnetcdf -L/usr/lib -lpthread' '--with-jdqz=-L/home/appel/opt/intel/lib' '--with-arpack=-L/home/appel/opt/intel/lib -larpack -lPEPCF90' '--with-sparskit=-L/home/appel/opt/intel/lib -lskit' '--disable-gdlib' '--host=i386-linux' '--build=i386-linux' '--prefix=/usr' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' 'CFLAGS=-static -Wall -O3' 'CPPFLAGS=-I/home/appel/opt/intel/include' 'FCFLAGS=-mp1 -prec_div -O3 -tpp7 -xW -static -I/home/appel/opt/intel/include' 'FC=ifc' 'LDFLAGS=-lpthread' 'build_alias=i386-linux' 'host_alias=i386-linux' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i386-pc-linux-gnu
checking host system type... i386-pc-linux-gnu
checking for i386-linux-gcc... i386-linux-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i386-linux-gcc accepts -g... yes
checking for i386-linux-gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of i386-linux-gcc... gcc3
checking for i386-linux-ranlib... no
checking for ranlib... ranlib
checking how to run the C preprocessor... i386-linux-gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for malloc... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
configure: configuring in libxc
configure: running /bin/sh './configure' --prefix=/usr  '--program-suffix=-intel-7.1' '--with-blas=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lblas -L/usr/lib -lpthread' '--with-lapack=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -llapack -L/usr/lib -lpthread' '--with-fft-lib=-L/opt/intel/compiler70/ia32/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -lfftw3 -L/usr/lib -lpthread' '--with-netcdf=-L/home/appel/opt/intel/lib -lguide -lCEPCF90 -L/home/appel/opt/intel/lib -I/home/appel/opt/intel/include -lnetcdf -L/usr/lib -lpthread' '--with-jdqz=-L/home/appel/opt/intel/lib' '--with-arpack=-L/home/appel/opt/intel/lib -larpack -lPEPCF90' '--with-sparskit=-L/home/appel/opt/intel/lib -lskit' '--disable-gdlib' '--host=i386-linux' '--build=i386-linux' '--prefix=/usr' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' 'CFLAGS=-static -Wall -O3' 'CPPFLAGS=-I/home/appel/opt/intel/include' 'FCFLAGS=-mp1 -prec_div -O3 -tpp7 -xW -static -I/home/appel/opt/intel/include' 'FC=ifc' 'LDFLAGS=-lpthread' 'build_alias=i386-linux' 'host_alias=i386-linux' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for i386-linux-gcc... i386-linux-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i386-linux-gcc accepts -g... yes
checking for i386-linux-gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of i386-linux-gcc... gcc3
checking for i386-linux-ranlib... no
checking for ranlib... ranlib
checking how to run the C preprocessor... i386-linux-gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for the size of a pointer... 4 bytes
checking for i386-linux-f90... ifc
checking whether we are using the GNU Fortran compiler... no
checking whether ifc accepts -g... yes
checking for Fortran flag to compile .f90 files... none
checking build system type... i386-pc-linux-gnu
checking host system type... i386-pc-linux-gnu
configure: Using FCFLAGS="-mp1 -prec_div -O3 -tpp7 -xW -static -I/home/appel/opt/intel/include"
checking how to get verbose linking output from ifc... -v
checking for Fortran libraries of ifc...  -lpthread -L/opt/intel/compiler70/ia32/lib -L/usr/lib -lsvml -lintrins -lIEPCF90 -lF90 -limf -lm -lirc -lcxa -lunwind
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for the size of a Fortran integer... configure: error: failed to compile f90 program to find the size of a Fortran integer
configure: error: /bin/sh './configure' failed for libxc
make: *** [build-stamp] Error 1
debuild: fatal error at line 765:
dpkg-buildpackage failed!
25:32528:52:./build.sh:'[' 25 '!=' 0 ']'
0:32528:54:./build.sh:sleep 5
0:32528:55:./build.sh:sleep 7
0:32528:56:./build.sh:exit 1
Sat Oct  7 02:12:07 CEST 2006
0:32528:54:./build.sh:tail -400 /home/appel/var/log/octopus_nightly_builds_i386.log.0