[Octopus-users] broken pipe? failed and skipped parallel tests in make check
Emily
listemily at eml.cc
Thu Feb 4 15:18:18 WET 2010
Hi Octopus Users,
Now that my configure, make, and make install commands seem to go okay,
I have a question about make check.
I'm installing the parallel version of Octopus 3.2.0. The non-parallel
version installed fine, and passed all the tests in make check.
The parallel version passes 34/38 tests on make check. It has a bunch
of broken pipe error messages. It fails 2 of the testcases of
finite_systems_3d/21-lobpcg.test. In the /04-propagate_eigenstate.test
it can't find the file "out". It skips 3 tests because it says it can't
find executables.
(./finite_systems_3d/02-curvilinear_coordinates.test,
./optimal_control/01-asym_doublewell.test,
./real_time/04-etrs_single.test)
The broken pipe messages seem to be interspersed randomly (not in the
tests that failed), but if I run make check again, they occur in exactly
the same places.
Anybody know how to fix these problems?
I am running the make check from my home directory that every node can
see and write to, rather than my usual way of copying the executable and
inp to a /tmp directory on the relevant node. Is this the correct thing
to do? Will I have to run octopus_mpi this way also? Is there any more
in-depth information about the way the parallelization works that I
should read other than the brief overview in the manual and the variable
reference?
Here are some relevant snippets of the output of my makecheck:
No valid executable found for
./finite_systems_3d/02-curvilinear_coordinates.test
Skipping ...
***** Propagate eigenstate of 1D square well *****
Using workdir :
/home/et/octopus/Oct3/octopus-3.2.0/tmp/octopus.7Qt65G
Using executable :
/home/et/octopus/Oct3/octopus-3.2.0/testsuite/../src/main/octopus_mpi
Using test file : ./open_systems/04-propagate_eigenstate.test
cat: /home/et/octopus/Oct3/octopus-3.2.0/tmp/octopus.7Qt65G/out: No such
file or directory
***** Asymmetric Double Well *****
No valid executable found for ./optimal_control/01-asym_doublewell.test
Skipping ...
No valid executable found for ./real_time/04-etrs_single.test
Skipping ...
***** LOBPCG (parallel) *****
Using workdir :
/home/et/octopus/Oct3/octopus-3.2.0/tmp/octopus.lXurFV
Using executable :
/home/et/octopus/Oct3/octopus-3.2.0/testsuite/../src/main/octopus_mpi
Using test file : ./finite_systems_3d/21-lobpcg.test
Using input file : ./finite_systems_3d/21-lobpcg.01-spin_polarized.inp
Starting test run ...
Executing: cd /home/et/octopus/Oct3/octopus-3.2.0/tmp/octopus.lXurFV;
/usr/local/intel/mpich/64/bin/mpirun -n 2
/home/et/octopus/Oct3/octopus-3.2.0/testsuite/../src/main/octopus_mpi >
out
Finished test run.
Eigenvalue 1 up: [ OK ]
Eigenvalue 1 dn: [ OK ]
Eigenvalue 2 up: [ OK ]
Eigenvalue 2 dn: [ OK ]
Eigenvalue 3 up: [ OK ]
Eigenvalue 3 dn: [ OK ]
Eigenvalue 4 up: [ OK ]
could not find input file: ./finite_systems_3d/21-lobpcg.02-spinors.inp
Eigenvalue 4 dn: [ OK ]
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